PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6180_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 243aa    MW: 27969.1 Da    PI: 6.3129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6180_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.3e-1913103199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ffkv++++ v++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+ +++Lk+g+f++F +dg+++f   v+vf +
  RrC6180_p1  13 FFKVFLSETVSES--MAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAGDHELKDGEFLTFVYDGSHTF--EVSVFGR 103
                 8999988888877..7******9655655..899****************..99998899************************998888..8888766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-268106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-239106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6211104IPR003340B3 DNA binding domain
CDDcd100171.02E-1811101No hitNo description
SMARTSM010193.1E-2213104IPR003340B3 DNA binding domain
PfamPF023623.6E-1613102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-6158226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-5161226IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSESEEEVDL PRFFKVFLSE TVSESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAGDHEL KDGEFLTFVY DGSHTFEVSV FGRSGCIEMR ALVETVNLSD  120
ANSDEEEEEE GDDEVHSMLA KMMKSARVCA LLTVMRQYQM LKLIPAIVVK EHRLTFCDRI  180
KYIDGEGIMY GAKVKWSDDR TCFKGWDRIC RRNRLREFDV VHCEMLHIRK KVHSIKITIT  240
RGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A9e-201210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-114AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681597.11e-141PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV52e-76REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3B4181e-139A0A0D3B418_BRAOL; Uncharacterized protein
STRINGBra003130.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.19e-47B3 family protein